Publications 2015

Title Author Reference Year Url / DOI
3D tracking of single nanoparticles and quantum dots in living cells by out-of-focus imaging with diffraction pattern recognition Gardini, L., Capitanio, M., Pavone F.S Sci. Rep. 5, 16088 2015 http://dx.doi.org/10.1038/srep16088
3D Tracking of Single Quantum Dots through Off-Focus Imaging Gardini, L., Capitanio, M., and FS Pavone Biophys. J. 108, 336a 2015 http://dx.doi.org/10.1016/j.bpj.2014.11.1836
A Compact “Water Window” Microscope with 60 nm Spatial Resolution for Applications in Biology and Nanotechnology Wachulak, P. et al. Microsc. Microanal. 21, 1214-1223 2015 http://dx.doi.org/10.1017/S1431927615014750
A compact “water-window” microscope with 60-nm spatial resolution based on a double stream gas-puff target and Fresnel zone plate optics Wachulak, P. et al. Proc. SPIE 9510, 95100M-8 2015 http://dx.doi.org/10.1117/12.2181431
A Hidden State in Light-Harvesting Complex II Revealed By Multipulse Spectroscopy van Oort, B., R. van Grondelle, and I. H. M. van Stokkum J. Phys. Chem. B 119, 5184-5193 2015 http://dx.doi.org/10.1021/acs.jpcb.5b01335
A series of flexible design adaptations to the Nikon E-C1 and E-C2 confocal microscope systems for UV, multiphoton and FLIM imaging Botchway, S. W.; et al. J. Microsc. 258, 68–78 2015 http://dx.doi.org/10.1111/jmi.12218
A versatile clearing agent for multi-modal brain imaging Costantini, I. et al. Sci. Rep. 5, 9808 2015 http://dx.doi.org/10.1038/srep09808
Adhesion and growth of human bone marrow mesenchymal stem cells on precise-geometry 3D organic­inorganic composite scaffolds for bone repair Chatzinikolaidou, M, S. Rekstyte, P. Danilevicius, C. Pontikoglou, H. Papadaki, M. Farsari, M. Vamvakaki Mater. Sci. Eng. C: Mater. Biol. Appl. 48, 301 2015 http://dx.doi.org/10.1016/j.msec.2014.12.007
An automated tool for 3D tracking of single molecules in living cells Gardini, L., Capitanio, M., and FS Pavone Proc. SPIE 9331, 933116 2015 http://arxiv.org/10.1117/12.2080378
Analytical Capability of Defocused µ-SORS in the Chemical Interrogation of Thin Turbid Painted Layers Conti, C.; et al. Appl. Spectrosc. 70, 156-61 2016 http://dx.doi.org/10.1177/0003702815615345
Application of laser plasma sources of soft X-rays and extreme ultraviolet (EUV) in imaging, processing materials and photoionization studies Fiedorowicz, H., A. Bartnik, P. W. Wachulak, R. Jarocki, J. Kostecki, M. Szczurek, I.U. Ahad, T. Fok, A. Szczurek, Ł. Węgrzyński Springer Proc. in Physics 169, 369 2015 https://doi.org/10.1007/978-3-319-19521-6_48
Assessment of In-Depth Degradation of Artificially Aged Triterpenoid Paint Varnishes Using Nonlinear Microscopy Techniques Filippidis, G., M. Mari, L. Kelegkouri, A. Philippidis, A. Selimis, K. Melessanaki, M. Sygletou, C. Fotakis Microsc. Microanal. 21, 510-517 2015 https://doi.org/10.1017/S1431927614013580
Autofluorescence-Assisted Examination of Cardiovascular System Physiology and Pathology Chorvatova A. Natural Biomarkers for Cellular Metabolism: Biology, Techniques, and Applications 2015 http://dx.doi.org/10.1201/b17427-17
Broadband (600-1350 nm) Time Resolved Diffuse Optical Spectrometer for Clinical Use Konugolu Venkata Sekar, S. et al. IEEE J. Selec. Topics in Quantum Electr. PP, 1-1 2015 http://dx.doi.org/10.1109/JSTQE.2015.2506613
Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo Ricci, M.A. et al. Cell 160, 1145-58 2015 http://dx.doi.org/10.1016/j.cell.2015.01.054
Compact laser produced plasma soft x-ray source for contact microscopy experiments Ayele, M., J. Czwartos, D. Adjei, P. Wachulak, A. Bartnik, Ł. Węgrzyński, M. Szczurek, R. Jarocki, H. Fiedorowicz Proc. SPIE 9511, 95110L 2015 http://dx.doi.org/ 10.1117/12.2182713
Comparison of key modalities of micro-scale spatially offset Raman spectroscopy Conti, C.; et al. Analyst 140 , 8127–8133 2015 http://dx.doi.org/10.1039/c5an01900a
Comprehensive optical and data management infrastructure for high-throughput light-sheet microscopy of whole mouse brains Muellenbroich, M.C. et al. Neurophoton. 2, 041404 2014 http://dx.doi.org/10.1117/1.NPh.2.4.041404
Comprehensive quantification of tablets with multiple active pharmaceutical ingredients using transmission Raman spectroscopy--a proof of concept study. Griffen, J.; et al. J. Pharmaceut. Biomed. 10, 277-82 2015 http://dx.doi.org/10.1016/j.jpba.2015.07.019.
Computationally effective solution of the inverse problem in time-of-flight spectroscopy Kamran F, Abildgaard OH, Subash AA, Andersen PE, Andersson-Engels S, Khoptyar D Opt. Express 23, 6937 2015 http://dx.doi.org/10.1364/OE.23.006937
Confocal and fluorescence lifetime imaging sheds light on the fate of a pyrene-tagged carbon monoxide-releasing Fischer carbene chromium complex Arrowsmith, R.L. et al. Dalton Trans. 2015, Advance Article 2015 http://dx.doi.org/10.1039/C4DT03312D
Design and construction of a solid switchable phantom for diffuse optical imaging Pifferi, A., et al. Proc. SPIE 9538, 95380Q 2015 http://dx.doi.org/10.1117/12.2183657
Desktop water window microscope using a double‑stream gas puff target source Wachulak, P. et al Appl. Phys. B 118, 573-578 2015 http://dx.doi.org/10.1007/s00340-015-6044-x
Determining the geometry of oligomers of the human epidermal growth factor family on cells with 7 nm resolution Zanetti-Domingues, L. C.; et al. Prog. Biophys. Mol. Bio. 118, 139-52 2015 http://dx.doi.org/10.1016/j.pbiomolbio.2015.04.002
Diode laser spectroscopy for non-invasive monitoring of oxygen in the lungs of newborn infants Svanberg, E. et al., Pediatric Research 2015 http://dx.doi.org/10.1038/pr.2015.267
Direct laser writing: Principles and materials for scaffold 3D printing Selimis, A., V. Mironov, M. Farsari Microelectron. Eng. 132, 83 2015 http://dx.doi.org/10.1016/j.mee.2014.10.001
Extreme ultraviolet (EUV) surface modification of polytetrafluoroethylene (PTFE) for control of biocompatibility Ahad, I. U. et al Nucl. Instr. Meth. Phys. Res. B 364, 98-107 2015 http://dx.doi.org/10.1016/j.nimb.2015.08.093
Extreme ultraviolet and soft X-ray imaging with compact, table top laser plasma EUV and SXR sources Wachulak, P. et al. Nucl. Instr. Meth. Phys. Res. B 364, 40-48 2015 http://dx.doi.org/10.1016/j.nimb.2015.06.004
Fast silicon photomultiplier improves signal harvesting and reduces complexity in time-domain diffuse optics Dalla Mora, Alberto, et al. Opt. Express 23, 13937-46 2015 http://dx.doi.org/10.1364/OE.23.013937
Fiber-based hybrid probe for non-invasive cerebral monitoring in neonatology Rehberger, M., et al. Proc. SPIE 9538, 95381J 2015 http://dx.doi.org/10.1117/12.2197927
Fiber-Based Optical Nanoantennas for Single-Molecule Imaging and Sensing Singh, A. et al. J. Lightwave Technol. 33, 2371-2377 2015 http://dx.doi.org/10.1109/JLT.2014.2386132
Fingerprinting of metabolic states by NAD(P)H fluorescence lifetime spectroscopy in living cells: A review Horilova J., et al Medical Photonics 27, 16-23 2015 http://dx.doi.org/10.1016/j.medpho.2014.06.001
Flavin fluorescence lifetime imaging of living peripheral blood mononuclear cells on micro and nano-structured surfaces Teplicky T. et al Proc. SPIE 9329, 93290D 2015 http://dx.doi.org/10.1117/12.2076706
Fresnel zone plate telescope for condenser alignment in water-window microscope Wachulak, P. et al. J. Opt. 17, 055606 2015 http://dx.doi.org/10.1088/2040-8978/17/5/055606
High-speed multi-exposure laser speckle contrast imaging with a single-photon counting camera Dragojević, T., et al. Biomed. Opt. Express 6, 2865–76 2015 http://dx.doi.org/10.1364/BOE.6.002865
Imaging ectopic fat deposition in caenorhabditis elegans muscles using nonlinear microscopy Mari M., et al. Microsc. Res. Techniq. 78, 523-528 2015 http://dx.doi.org/10.1002/jemt.22504
Large-Scale Arrays of Bowtie Nanoaperture Antennas for Nanoscale Dynamics in Living Cell Membranes Flauraud, F. et al. Nano Lett.15, 4176–4182 2015 http://dx.doi.org/10.1021/acs.nanolett.5b01335
Laser fabricated discontinuous anisotropic microconical substrates as a new model scaffold to control the directionality of neuronal network outgrowth Simitzi, C. et al. Biomaterials 67, 115-128 2015 http://dx.doi.org/10.1016/j.biomaterials.2015.07.008
Laser plasma sources of soft X-rays and extreme ultraviolet (EUV) for application in science and technology Bartnik, A., P. Wachulak, R. Jarocki, J. Kostecki, M. Szczurek, D. Adjei, I.U. Ahad, M. Ayele, T. Fok, A. Szczurek, A. Torrisi, Ł. Węgrzyński, H. Fiedorowicz Proc. SPIE 9510 , 95100Q 2015 http://dx.doi.org/10.1117/12.2182167
Mapping Lac Repressor Interactions along DNA with Ultra-Fast Optical Tweezers Tempestini, A., et al. Biophys. J. 108, 205a 2015 http://dx.doi.org/10.1016/j.bpj.2014.11.1135
Matching Nanoantenna Field Confinement to FRET Distances Enhances Förster Energy Transfer Rates Ghenuche, P. et al. Nano Lett. 15, 6193−6201 2015 http://dx.doi.org/10.1021/acs.nanolett.5b02535
Mechanically switchable solid inhomogeneous phantom for performance tests in diffuse imaging and spectroscopy Pifferi, A., A. Torricelli, R. Cubeddu, G. Quarto, R. Re, S. Konugolu, L. Spinelli, A. Farina, F. Martelli, H. Wabnitz J. Biomed. Opt. 20, 121304 2015 http://dx.doi.org/10.1117/1.JBO.20.12.121304
Nanometric molecular separation measurements by single molecule photobleaching Webb, S. E. D.; et al. Methods 88, 76–80 2015 http://dx.doi.org/10.1016/j.ymeth.2015.05.009
Nanoscale imaging and optimization of a compact "water window" SXR microscope Torrisi, A. et al. Proc. SPIE 9510, 95100N-11 2015 http://dx.doi.org/10.1117/12.2181436
Non-contact scanning diffuse correlation tomography system for three-dimensional blood flow imaging in a murine bone graft model Songfeng, H. et al. Biomed. Opt. Express 6, 2695–2712 2015 http://dx.doi.org/10.1364/BOE.6.002695
Non-linear imaging and characterization of atherosclerotic arterial tissue using combined SHG and FLIM microscopy Cicchi, R. et al., J. Biophoton. 8, 347-356 2015 http://dx.doi.org/10.1002/jbio.201400142
Nonlinear imaging techniques as non-destructive, high-resolution diagnostic tools for cultural heritage studies Filippidis, G., G.J. Tserevelakis, A. Selimis, C. Fotakis Appl. Phys. A 118, 417-423 2015 https://doi.org/10.1007/s00339-014-8357-8
Optimized signal-to-noise ratio with shot noise limited detection in Stimulated Raman Scattering microscopy Moester, M.J.B., F. Ariese, and J.F. de Boer J. Eur. Opt. Soc.-Rapid 10, 15022 2015 http://dx.doi.org/10.2971/jeos.2015.15022
Parallel Measurements of in-vivo Skin Autofluorescence Lifetimes and Photobleaching Rates Lihachev, A. et al. IFMBE Proceedings 48, 78-81 2015 http://dx.doi.org/10.1007/978-3-319-12967-9_21
Pharmacokinetic and biodistribution study following systemic administration of Fospeg® - a Pegylated liposomal mTHPC formulation in a murine model Xie, H. et al. J. Biophoton. 8, 142-52 2015 http://dx.doi.org/10.1002/jbio.201300133
Photobleaching effects on in vivo skin autofluorescence lifetime Ferulova, I. et al. J. Biomed. Opt. 20, 51031 2015 http://dx.doi.org/10.1117/1.JBO.20.5.051031
Polarization sensitive optical frequency domain imaging system for endobronchial imaging Jianan Li, et al. Opt. Express 23, 3390-3402 2015 http://dx.doi.org/10.1364/OE.23.003390
Preclinical study of SZ2080 material 3D microstructured scaffolds for cartilage tissue engineering made by femtosecond direct laser writing lithography Maciulaitis, J et al., Biofabrication 7, 015015 2015 http://dx.doi.org/10.1088/1758-5090/7/1/015015
Quantitative high spatiotemporal imaging of biological processes Borbely, J. et al. Proc. SPIE 9554, 95540M 2015 http://dx.doi.org/10.1117/12.2190263
Quantitative neuroanatomy of all Purkinje cells with light sheet microscopy and high-throughput image analysis Silvestri, L. et al. Front. Neuroanat. 27, 68 2015 http://dx.doi.org/10.3389/fnana.2015.00068
Reticulomics: Protein-protein interaction studies with two plasmodesmata-localised reticulon family proteins identify binding partners enriched at plasmodesmata, ER and the plasma membrane Kriechbaumer, V.; et al. Plant Physiol, 169, 1933–1945 2015 http://dx.doi.org/10.1104/pp.15.01153
Simultaneous detection of tissue autofluorescence decay distribution and time-gated photo-bleaching rates Lihachev, A. et al Proc. SPIE 9504, 95040P 2015 http://dx.doi.org/10.1117/12.2178827
Single molecule microscopy and spectroscopy: concluding remarks Niek F. van Hulst Faraday Discussions 184, 475–484 2015 http://dx.doi.org/10.1039/C5FD00147A
Solid switchable phantom for diffuse optical imaging Pifferi, A., et al. Proc. SPIE 9325, 932505 2015 http://dx.doi.org/10.1117/12.2084789
Spectrally Resolved Single-Photon Timing of Silicon Photomultipliers for Time-Domain Diffuse Spectroscopy Martinenghi, E., et al. IEEE Photonics Journal 7 , 7159013 2015 http://dx.doi.org/10.1109/JPHOT.2015.2456070
The effect of porosity on cell ingrowth into accurately defined, laser-made, polylactide-based 3D scaffolds Danilevicius, P. et al. Appl. Surf. Sci. 336, 2-10 2015 http://dx.doi.org/10.1016/j.apsusc.2014.06.012
Third Harmonic Generation microscopy as a reliable diagnostic tool for evaluating lipid body modification during cell activation: the example of BV-2 microglia cells Gavgiotaki E., et al. J. Struct. Biol. 189, 105-13 2015 http://dx.doi.org/10.1016/j.jsb.2014.11.011
Time-domain diffuse optics: towards next generation devices Contini, D., et al Proc. SPIE 9538, 95380A 2015 http://dx.doi.org/10.1117/12.2183693
Time-Resolved Spectrometry of Mitochondrial NAD(P)H Fluorescence and Its Applications for Evaluating the Oxidative State in Living Cells Horilova, J. et al. Methods in Molecular Biology Vol. 1264 2015 http://dx.doi.org/10.1007/978-1-4939-2257-4_17
Time-Resolved Spectroscopy of NAD(P)H in Live Cardiac Myocytes Chorvatova, A. Advanced Time-Correlated Single Photon Counting Applications 111, 407-434 2015 http://arxiv.org/10.1007/978-3-319-14929-5_13
Tissue phantoms to compare spatial and temporal offset modes of deep Raman spectroscopy Iping Petterson IE, et al Analyst 140, 2504-2512 2015 http://dx.doi.org/10.1039/C4AN01889C
Towards a comprehensive understanding of brain machinery by correlative microscopy Mascaro, A.L.A. et al. J. Biomed. Opt. 20, 061105 2015 http://dx.doi.org/10.1117/1.JBO.20.6.061105
Towards next generation time-domain diffuse optics devices Dalla Mora, A., et al. Proc. SPIE 9319, 93191J 2015 http://dx.doi.org/10.1117/12.2078955
Towards next-generation time-domain diffuse optics for extreme depth penetration and sensitivity Dalla Mora, A., D. Contini, S. Arridge, F. Martelli, A. Tosi, G. Boso, A. Farina, T. Durduran, E. Martinenghi, A. Torricelli, and A. Pifferi Biomed. Opt. Express 6, 1749 2015 http://dx.doi.org/10.1364/BOE.6.001749
Transmission Near-Infrared (NIR) and Photon Time-of-Flight (PTOF) Spectroscopy in a Comparative Analysis of Pharmaceuticals Kamran, F., Abildgaard, O. H., Sparén, A., Svensson, O., Johansson, J., Andersson-Engels, S., Khoptyar, D. Appl. Spectrosc. 69, 389 2015 http://dx.doi.org/10.1366/14-07530
Using ferrule-top opto-mechanical probes as a new tool in VCSEL reliability experiments van Hoorn CH, et al. Opt. Express 23, 30318-30328 2015 http://dx.doi.org/10.1364/OE.23.030318